PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0374s00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 238aa    MW: 26192.1 Da    PI: 5.2831
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0374s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.4e-3898199389
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssg.. 88 
                        +kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s +     +c+ ++s+ s++n+s +  
  Vradi0374s00040.1  98 AKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSisggDKCSGDASVDSNNNKSLAgn 189
                        79*************************************************************55555444566755566665555554445 PP

                TCP  89 .........k 89 
                                  
  Vradi0374s00040.1 190 wdtngaftgY 199
                        5555555550 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3698192IPR005333Transcription factor, TCP
PROSITE profilePS5136934.81499157IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFSSTYDSNL FPNFPSSSYP ILPFLIDPEN DFASNTLFDD PLLVPFTPIT HDPPFPEETV  60
ANFAVADCTA ILEQDANTNY GSHNGSMSNF LTQKPAIAKK DRHSKIHTSQ GLRDRRVRLS  120
SEIARKFFDL QDMLEFDKPS NTLEWLFTKS ENAIKELAQS KHSGSISGGD KCSGDASVDS  180
NNNKSLAGNW DTNGAFTGYS NFCAIGTMNL STCFMNPCFP DSSKAKQKST TYFTKAL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523924.11e-134PREDICTED: transcription factor DICHOTOMA-like
SwissprotO492509e-28CYCLD_ANTMA; Transcription factor CYCLOIDEA
SwissprotQ9SBV67e-28CYCLD_ANTML; Transcription factor CYCLOIDEA (Fragment)
TrEMBLA0A0S3SMV71e-133A0A0S3SMV7_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TZZ71e-133A0A0L9TZZ7_PHAAN; Uncharacterized protein
STRINGGLYMA20G28670.12e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-27TCP family protein